PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g09030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 202aa    MW: 21989.9 Da    PI: 11.0083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g09030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-202776255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++ ++g
  Tp2g09030 27 RFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAARDFRG 76
               69*******.**********8...557**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-142776IPR001471AP2/ERF domain
CDDcd000185.50E-182784No hitNo description
PROSITE profilePS5103223.922784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-322784IPR001471AP2/ERF domain
SMARTSM003803.0E-382790IPR001471AP2/ERF domain
PRINTSPR003672.9E-112839IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-222885IPR016177DNA-binding domain
PRINTSPR003672.9E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAPNKGNASS AAVCGGGGGK TTRREVRFRG VRKRPWGRYA AEIRDPGKKT RVWLGTFDTA  60
EEAARAYDAA ARDFRGSKAK TNFPLHGEST VSDGSAGENG SFINRSPEMA PREMKRRVGM  120
AGRFPFACHR QNNVSGGLAP AVAGFFFDPS RAAALRAELS RVYPVRFDPV NIELSIGIRE  180
TVKVEPRREL NLDLNLAPPV DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2027841472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g09030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533721e-93AK353372.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-25-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403128.11e-103ethylene-responsive transcription factor 9
SwissprotQ9FE671e-101ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLE4MXX51e-102E4MXX5_EUTHA; mRNA, clone: RTFL01-25-G16
TrEMBLV4NET21e-102V4NET2_EUTSA; Uncharacterized protein
STRINGXP_006403128.11e-102(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-70erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]