PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g08990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 427aa    MW: 47127.8 Da    PI: 8.2682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g08990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-052646323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ Cgk F r  nL+ H r H
  Tp2g08990 26 CEVCGKGFQRDQNLQLHRRGH 46
               *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.98E-62346No hitNo description
Gene3DG3DSA:3.30.160.602.3E-52346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.512446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-488121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.98E-695120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MIYTDPEAEV IALSPKTLMA TNRFLCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV  60
RKRVYVCPEK TCVHHHSSRA LGDLTGIKKH FCRKHGEKKW KCEKCAKRYA VLSDYKAHSK  120
TCGTREYRCD CGTIFSRRDS FITHRAFCDA LAEETAKINA ASHLGGLAAA GTAGINLNYQ  180
YLMGTLNPPL QPFVPQPPTN QNHHHHHFLP PPPSSSSSLS LWMGQDIPPP QPQPQDYEWV  240
FGNAKAASTC ININNNNNHD ELITQTANAS STTTAATLSV PSLFSSDQTQ SPNANTNMSA  300
TALLQKAAEI GANSTATTTN DPSAFLQSFP LKSSHQTATY DGGEKFFALF GSNNNIGVMS  360
HNHDQEIENA RNDVTVASAM DELQNYPWKR RRVDGGGEGG QTRDFLGVGV QTLCHPTSIN  420
MDGFDTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3396163370Zinc finger protein JACKDAW
5b3h_F7e-3396163370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g08990
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478946.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9FFH30.0IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLD7MN230.0D7MN23_ARALL; Zinc finger family protein
STRINGscaffold_800604.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]