PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g08370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 136aa    MW: 15030.8 Da    PI: 9.4093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g08370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-053557123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H++ H
  Tp2g08370 35 YECTFCKRGFTNAQALGGHMNIH 57
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-73262No hitNo description
Gene3DG3DSA:3.30.160.609.5E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MESERSSSST SSETGSVRHR RTSSLSVSTV TRRMYECTFC KRGFTNAQAL GGHMNIHRRD  60
RLNKAAKLQN DADVALSGAR RCFHVASSDR GGYEHVDSVL LRTTTNLSLR IGSMVTGREN  120
VVVEGDEIDL ELRLGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g08370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895911e-146AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455078.11e-75PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1J3EMW96e-78A0A1J3EMW9_NOCCA; Transcriptional regulator TAC1 (Fragment)
STRINGBo7g065530.11e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-55C2H2 family protein