PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g05460

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 370aa MW: 41843.6 Da PI: 8.9272

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g05460	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.7	2.1e-07	239	279	17	57
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 A+rsR RK+++i eLe+ v++L+ae ++ el+ l++ + Tp2g05460 239 AQRSRVRKLQYISELERNVQTLQAEGSKVTAELDFLNQRSL 279 89******************************999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	5.40E-13	232	277	No hit	No description
SuperFamily	SSF57959	2.09E-5	239	281	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-5	239	277	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MSGSKGSESV RNLMYPGKNA LLPPKIPFPS VSASYSEYIP CGLKGSRHGQ RLSDEKTHHQ 60 RTSSESHLVE ELPFWLDDLL NEPESPARRC GHRRSSSDSY AYLDVANATN ISLTLQNDFS 120 YRNTVASTQR GIQELDRSKN AQAAAFYTDV NFLKQKNLQR DSLVASGVRP CLLPSARESV 180 GGKNMGASYM PQEATAETKN YAETLSHDLK RFSSEENNSN AQPVTYEAEN IKRAKQQFAQ 240 RSRVRKLQYI SELERNVQTL QAEGSKVTAE LDFLNQRSLI LSLENKALER RLESISQEKL 300 IKQLEQEVLE NEIERLRALY QQQQQTYKPS ATHGRATSKD LESQFSSLSL NTKDSNYRRD 360 SVSVLGQLHF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MSGSKGSESV RNLMYPGKNA LLPPKIPFPS VSASYSEYIP CGLKGSRHGQ RLSDEKTHHQ  60
RTSSESHLVE ELPFWLDDLL NEPESPARRC GHRRSSSDSY AYLDVANATN ISLTLQNDFS  120
YRNTVASTQR GIQELDRSKN AQAAAFYTDV NFLKQKNLQR DSLVASGVRP CLLPSARESV  180
GGKNMGASYM PQEATAETKN YAETLSHDLK RFSSEENNSN AQPVTYEAEN IKRAKQQFAQ  240
RSRVRKLQYI SELERNVQTL QAEGSKVTAE LDFLNQRSLI LSLENKALER RLESISQEKL  300
IKQLEQEVLE NEIERLRALY QQQQQTYKPS ATHGRATSKD LESQFSSLSL NTKDSNYRRD  360
SVSVLGQLHF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g05460

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888232.2	0.0	uncharacterized protein At4g06598 isoform X1
Refseq	XP_020891575.1	0.0	uncharacterized protein At4g06598 isoform X2
Refseq	XP_020891576.1	0.0	uncharacterized protein At4g06598 isoform X3
TrEMBL	D7KY87	0.0	D7KY87_ARALL; Predicted protein
STRING	Al_scaffold_0002_682	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	0.0	bZIP family protein