PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g04790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 664aa MW: 73600.4 Da PI: 6.185 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.6e-22 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el+ Tp2g04790 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENEELR 219 99****************************964333..4459************************************************..3488889* PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ Tp2g04790 220 VGVRRH 225 ***996 PP | |||||||
2 | Auxin_resp | 114.8 | 8e-38 | 250 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t+++F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk Tp2g04790 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNKYLEAKNQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 332 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-44 | 113 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-40 | 121 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.87E-19 | 122 | 224 | No hit | No description |
Pfam | PF02362 | 1.1E-19 | 124 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-35 | 250 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.5E-11 | 533 | 631 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 30.122 | 541 | 634 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.7E-11 | 543 | 618 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MAASNHPSGK PGGALSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL 60 EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE ADQSEPICPD APVQEPEKCT 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH 240 SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNKY LEAKNQKLSV GMRFKMRFEG 300 EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST 360 PSSHPPPQRN KRPRPPGLPS PTTAPSTPVT ADGVWKSPAD NPSSVPLFSP PAKTAAYSHG 420 GNKSFGVSIG SAFWPTHADS AAESFASAFN ETPTEKKQTN GNVCRLFGFE LVENVNVDEC 480 FSAASVSGAV AVDQPVPSNE FDSSQQSVPL NTNQSNIPSG SGDPEKSSLR SPQESQSRQI 540 RSCTKVHMQG SAVGRAVDLT RSECYEDLFK KLEEMFDIEG ELLESTRKWQ VVYTDDEDDM 600 MMVGDDPWNE FCGMVRKIFI YTPEEVKKLS PKNKLTVNVR MQPKTDADEN GNTEGRSSST 660 AGSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 374 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g04790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979458 | 0.0 | JN979458.1 Brassica rapa subsp. pekinensis auxin response factor 1 (ARF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103121.1 | 0.0 | PREDICTED: auxin response factor 1 isoform X1 | ||||
Refseq | XP_009103129.1 | 0.0 | PREDICTED: auxin response factor 1 isoform X1 | ||||
Refseq | XP_009103136.1 | 0.0 | PREDICTED: auxin response factor 1 isoform X1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A398APJ4 | 0.0 | A0A398APJ4_BRACM; Auxin response factor | ||||
STRING | Bra035427.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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