PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g03410
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 324aa    MW: 36361.6 Da    PI: 8.451
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g03410genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53161421128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nra++sgyWkatg+dk++++ ++++v
  Tp2g03410  16 LPPGFRFHPTDEELVVHYLKKKASSIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRERKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKV 114
                79****************************.89***************988899********************************************** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kk Lvfy g+ pkg ktdW+mheyrl
  Tp2g03410 115 GVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-648178IPR003441NAC domain
PROSITE profilePS5100560.46716177IPR003441NAC domain
PfamPF023651.8E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKASS IPLPVSIIAE IDLYKFDPWE  60
LPSKASFGEQ EWYFFSPRER KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLSTA AKPPDSTTTR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNDNNNN NNNEEHFFDG MVASSDKRSL  240
CGQYRMGHEA SGSSSFGSFL SSKRFHHTSD LNNDNYNVSF VSMLSEIPQS SGFHGNGVID  300
TTSSLADHGV LRQAFQLPNM NWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-731618017168NO APICAL MERISTEM PROTEIN
1ut4_B6e-731618017168NO APICAL MERISTEM PROTEIN
1ut7_A6e-731618017168NO APICAL MERISTEM PROTEIN
1ut7_B6e-731618017168NO APICAL MERISTEM PROTEIN
3swm_A6e-731618020171NAC domain-containing protein 19
3swm_B6e-731618020171NAC domain-containing protein 19
3swm_C6e-731618020171NAC domain-containing protein 19
3swm_D6e-731618020171NAC domain-containing protein 19
3swp_A6e-731618020171NAC domain-containing protein 19
3swp_B6e-731618020171NAC domain-containing protein 19
3swp_C6e-731618020171NAC domain-containing protein 19
3swp_D6e-731618020171NAC domain-containing protein 19
4dul_A6e-731618017168NAC domain-containing protein 19
4dul_B6e-731618017168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g03410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747590.0KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473311.10.0PREDICTED: NAC transcription factor 25-like
RefseqXP_018454723.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A078FI470.0A0A078FI47_BRANA; BnaA09g13880D protein
STRINGBostr.10040s0089.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25