PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g01530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 250aa    MW: 26168.3 Da    PI: 4.5652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g01530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-1686135155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a++ l+g
  Tp2g01530  86 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALVLKG 135
                68****9.55.6*********854...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-986134IPR001471AP2/ERF domain
SMARTSM003801.1E-2687149IPR001471AP2/ERF domain
PROSITE profilePS5103219.80987143IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1887145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-2687145IPR001471AP2/ERF domain
CDDcd000182.83E-1788145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MADPKNPFTE PKAISQASSS SVTIVPARTC GDSLFGSVTY EKSCPLATIT TATVSSAADS  60
STTSCNDNDT LMATDAGSVS RRKKHPVYRG IRCRSGKWVS EIREPKKTTR VWLGTYPTPE  120
MAAAAYDVAA LVLKGGDTVL NFPDSVGSYP LPVSSSAAHI RMAAAKAAAT VGAAAAAANS  180
AVKEGEKKED EVCDVAGSSA MEFVDEEELL NMPGLLEDMA KGMMVAPPWM GSPPSDDSPE  240
NSDGESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-12841431172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g01530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894371e-169AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455023.11e-125PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN91e-101ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A3P5XWN01e-122A0A3P5XWN0_BRACM; Uncharacterized protein
TrEMBLM4EFQ21e-122M4EFQ2_BRARP; Uncharacterized protein
STRINGBra027615.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-39ERF family protein