PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g00370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 139aa    MW: 15826.1 Da    PI: 10.6818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g00370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1879129256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+G r+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Tp2g00370  79 LYRGMRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 129
                59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-1478137No hitNo description
Gene3DG3DSA:3.30.730.108.7E-3079136IPR001471AP2/ERF domain
SMARTSM003806.6E-2979138IPR001471AP2/ERF domain
PROSITE profilePS5103222.45879136IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2279136IPR016177DNA-binding domain
PRINTSPR003673.6E-108091IPR001471AP2/ERF domain
PfamPF008474.5E-1280129IPR001471AP2/ERF domain
PRINTSPR003673.6E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDTPGQAPKK LGSSVYLRQR DLIERLHLQS RAISTPPPLF SSSYDHQASE LMLQAGSATP  60
AAAFAAVLAA ERTAKKKKLY RGMRQRHWGK WVAEIRLPQN RMRVWLGTYD TAEAAAYAYD  120
RAAYKLRGEY ARLNFQNPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1976135262ATERF1
3gcc_A3e-1976135262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g00370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666891e-128AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287631e-128AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608761e-128AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330821e-128BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026841e-128CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302524.18e-55ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-51ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1J3CQU74e-55A0A1J3CQU7_NOCCA; Uncharacterized protein
STRINGXP_006302524.13e-54(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.18e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]