PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g00350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 336aa    MW: 36549 Da    PI: 6.812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g00350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-19135185256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Tp2g00350 135 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 185
                59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.05E-17134194No hitNo description
SuperFamilySSF541711.77E-22135192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-31135193IPR001471AP2/ERF domain
SMARTSM003801.1E-36135198IPR001471AP2/ERF domain
PROSITE profilePS5103223.301135192IPR001471AP2/ERF domain
PRINTSPR003674.4E-10136147IPR001471AP2/ERF domain
PfamPF008473.4E-13136185IPR001471AP2/ERF domain
PRINTSPR003674.4E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEESNDVFQT SFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSVESS TTSLDTLNPP  60
PPPPQQLGSS VYLRQRDIIE RLHLQSRAIS TPPPLFSSSY DHQASELMLQ AGSATPAAAF  120
ATALAAGRTA KKKKLYRGVR QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY  180
KLRGEYARLN FPNLKDPSEL LGLGDSSKLI ALKSAVDGKI QSICQRVRRE RAKKSKNSAA  240
ATADSSYSSS PETLSSPAAT ATATAVNSED SYWNSPMGLW NSENSSPASV SISDEIPVRT  300
NAAAEEETMM GVDTEGFLLA RMPSFDPELI WEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19132192263ATERF1
3gcc_A2e-19132192263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g00350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391624.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-162ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1J3CQU70.0A0A1J3CQU7_NOCCA; Uncharacterized protein
STRINGXP_006391624.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-134ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]