PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g00220

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 840aa MW: 93318.7 Da PI: 6.6277

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g00220	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Tp2g00220 556 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 606 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	545	626	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	558	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.4E-20	728	824	No hit	No description
PROSITE profile	PS51745	20.135	736	822	IPR000270	PB1 domain
SMART	SM00666	1.4E-23	736	822	IPR000270	PB1 domain
Pfam	PF00564	2.3E-18	737	821	IPR000270	PB1 domain
CDD	cd06407	7.69E-34	737	821	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-25	737	822	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MELDDLDLGG SWPLDQITFA SNFRSPVIFS SSEQPFSPLW SFPEAASASG DGGGELCSAS 60 GAPTRFTDYS VLLASSESET TKDNNLVPSP LWGIMPMENP DSHCPIKAKM TQALRYFKES 120 TGQQHVLAQV WAPVKNRGRY VLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SVDSERDGEL 180 GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QICVGVVELI 240 MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY 300 KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA 360 CAEHHLQKGQ GVAGRAFLSG NLCFCRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT 420 GDDEYVLEFF LPPVITAKGE QDCLLGSLFQ TMKEHYSSLK VVSGTDLYGN ELSIEVVEAS 480 EDGMVYSKLE PIQIHHPAPI SKDYLQLNAP EQKLSLNPDL VENNEVADRF EKFQSLDTSP 540 DAKTGKKSER KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS 600 RKINKVNRSL TRLKHVIDSV QGTDGSINLT SLSSRPWPHQ VSPIENQPPP TTRSPTSYLQ 660 DIKLENRDAE DSAGSSTSRA SCKVSPICET RFRLLSQNQE AFKQTALDDS DSTSKTITNF 720 WTSQYTASPT ALHNKLVSIK ATYREDIIRF KISPESVSIT ELKHQVAKRL KLETVAFELK 780 YLDDDNEWVS VSCDADLSEC LDTSSVVTAA KANTLRLSVH DVTTNFGSSC ESSQEYMMCL

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MELDDLDLGG SWPLDQITFA SNFRSPVIFS SSEQPFSPLW SFPEAASASG DGGGELCSAS  60
GAPTRFTDYS VLLASSESET TKDNNLVPSP LWGIMPMENP DSHCPIKAKM TQALRYFKES  120
TGQQHVLAQV WAPVKNRGRY VLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SVDSERDGEL  180
GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QICVGVVELI  240
MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY  300
KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA  360
CAEHHLQKGQ GVAGRAFLSG NLCFCRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT  420
GDDEYVLEFF LPPVITAKGE QDCLLGSLFQ TMKEHYSSLK VVSGTDLYGN ELSIEVVEAS  480
EDGMVYSKLE PIQIHHPAPI SKDYLQLNAP EQKLSLNPDL VENNEVADRF EKFQSLDTSP  540
DAKTGKKSER KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS  600
RKINKVNRSL TRLKHVIDSV QGTDGSINLT SLSSRPWPHQ VSPIENQPPP TTRSPTSYLQ  660
DIKLENRDAE DSAGSSTSRA SCKVSPICET RFRLLSQNQE AFKQTALDDS DSTSKTITNF  720
WTSQYTASPT ALHNKLVSIK ATYREDIIRF KISPESVSIT ELKHQVAKRL KLETVAFELK  780
YLDDDNEWVS VSCDADLSEC LDTSSVVTAA KANTLRLSVH DVTTNFGSSC ESSQEYMMCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g00220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	V4JU57	0.0	V4JU57_EUTSA; Uncharacterized protein
STRING	XP_006391609.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]