PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g41620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 35983.9 Da PI: 7.4244 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.5e-49 | 18 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+d+elv++yL ++ +++ + +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ Tp1g41620 18 LPPGFRFHPKDDELVCDYLMRRSLDQSqtlP---PpplLLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR 114 79*******************9998884542...22225899************8777799**************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k +lvg++ktLvfy+grap+g+kt Wvmhe+rl Tp1g41620 115 -KCKLVGMRKTLVFYQGRAPRGRKTGWVMHEFRL 147 .8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-60 | 9 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.561 | 18 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 19 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEWEEEKESS ISMVEAKLPP GFRFHPKDDE LVCDYLMRRS LDQSQTLPPP PLLLIQVDLN 60 KCEPWDIPKM ACVGGKDWYF YSQRDRKYAT GLRTNRATAT GYWKATGKDR AILRKCKLVG 120 MRKTLVFYQG RAPRGRKTGW VMHEFRLHGS FDPPHHSPKE DWVLCRVFQK NTEGVLRRDN 180 MGSCFVETAS ASLPPLMDSY INFDEEPSSY LTDDHHFIIN EQVPCFSNLS QNQTLKPNLT 240 NSVSELKPPC KNPDPLFTGG SAPATLPGLD SFCSSDHMVL RALLSQLTKI DGSIGAKESQ 300 SYGQGGSESL LTNIGAWNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-49 | 14 | 173 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g41620 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352835 | 0.0 | AK352835.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-A17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894549.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | D7KN59 | 0.0 | D7KN59_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4992 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |