PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g40770

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 475aa MW: 53263.2 Da PI: 8.6666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g40770	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Tp1g40770 95 FICEICNKGFQRDQNLQLHKRGH 117 89******************988 PP
2	zf-C2H2	13.5	0.00021	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Tp1g40770 172 WKCDKCSKKYAVQSDWKAHAKTC 194 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.86E-7	94	117	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-6	94	117	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.803	95	117	IPR007087	Zinc finger, C2H2
Pfam	PF12171	3.1E-5	95	117	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	137	167	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	160	193	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.86E-7	167	192	No hit	No description
SMART	SM00355	150	172	192	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MMMNKDMLFH HQQQMEENMS NLTSASGDQA SVSSGTRTET SGSNFHYNIN PNQQQEQCFV 60 PQSSQKKKRN QPGNPDPEAE VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP 120 WKLKQRSNKD VIRKKVYVCP EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK 180 YAVQSDWKAH AKTCGTKEYK CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS 240 SSPPPPPQHH HHHQTQQNIN FSSSSQNIMR NNNLHGHEFP MKQEEPHHHF QNIPPWLASS 300 SNPNPNGNNG NYFPLASSSA TATTGRSNFH HSSPAMSATA LLQKAAQMGP SKSATTPEEE 360 ERSSSRQGAY NNLITTTMAA AMMTPPSEPG FGFQDYYMMN HHPHHHPGAG EAFNGGFITG 420 DKKNDVADDG RGETRDFLGL RSLMSHNEIL SFANNLGNCI NTSASEQQHQ YSHQD

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MMMNKDMLFH HQQQMEENMS NLTSASGDQA SVSSGTRTET SGSNFHYNIN PNQQQEQCFV  60
PQSSQKKKRN QPGNPDPEAE VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP  120
WKLKQRSNKD VIRKKVYVCP EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK  180
YAVQSDWKAH AKTCGTKEYK CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS  240
SSPPPPPQHH HHHQTQQNIN FSSSSQNIMR NNNLHGHEFP MKQEEPHHHF QNIPPWLASS  300
SNPNPNGNNG NYFPLASSSA TATTGRSNFH HSSPAMSATA LLQKAAQMGP SKSATTPEEE  360
ERSSSRQGAY NNLITTTMAA AMMTPPSEPG FGFQDYYMMN HHPHHHPGAG EAFNGGFITG  420
DKKNDVADDG RGETRDFLGL RSLMSHNEIL SFANNLGNCI NTSASEQQHQ YSHQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-36	168	229	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-36	168	229	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	134	KLKQRSNKDVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g40770

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352994	0.0	AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106906.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_013740522.1	0.0	protein indeterminate-domain 7-like isoform X1
Refseq	XP_018509298.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	0.0	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3P6BBU9	0.0	A0A3P6BBU9_BRACM; Uncharacterized protein
STRING	Bo3g184730.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	0.0	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]