PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp1g40390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 39207.4 Da PI: 5.0531 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g Tp1g40390 124 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 173 69*******.**********965...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-22 | 124 | 182 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-33 | 124 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-17 | 124 | 182 | No hit | No description |
SMART | SM00380 | 4.3E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 124 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-13 | 125 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MCGGAIISDF IPPPTSRRVT SEFIWPDLKK NVKGLKKSSK KRSIFFDLDD EFEADFQGFK 60 DDSSIDCDDD FDVDDVFADV KPFVFTATPK PVVSSAAANS ASGKKVADFN GKAEKSAKRK 120 RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF 180 PEENPSVSQK RPAKASPQKT VAKPNPNPAL VQNFDNSFDN MCFVEEKHQV NHNNQFGLTN 240 SIDAAVGNGY HQYFSSDQGS NSFGCSEFGW SDQAPITPEI SSAFINDSSA LFIEEANPAK 300 KLKAMDFETP YNNTEWDSSL DFLNGDAVAT QDNGANPMDL WSIDEIDSMI GGVF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-23 | 124 | 181 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 28 | 41 | KKNVKGLKKSSKKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp1g40390 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353211 | 0.0 | AK353211.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-M23. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392736.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_006392737.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 0.0 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | E4MXG4 | 0.0 | E4MXG4_EUTHA; mRNA, clone: RTFL01-22-M23 | ||||
TrEMBL | V4KJG3 | 0.0 | V4KJG3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392736.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-151 | related to AP2 12 |