PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g39800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TCP | ||||||||
Protein Properties | Length: 372aa MW: 40450.5 Da PI: 7.2068 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.2 | 3.5e-35 | 54 | 167 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++ + ++ Tp1g39800 54 TGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAQLppwnpadtirqaaaN--------------AK----- 134 79**************************************************************544443333222110..............11..... PP TCP 88 g..................kaaksaakskksqksa 104 + ++++++++ ++++ Tp1g39800 135 PrrsktlvpppesgirggsG--EETEHHHHHHHHQ 167 11112233344334444321..1111122222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-32 | 54 | 166 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.272 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MADEESNHHH LIVDSPSPLP RGIRHQSAFS TAATENGGCG EIVEVEGGHI VRSTGRKDRH 60 SKVCTAKGPR DRRVRLSAPT AIQFYDVQDR LGFDRPSKAV DWLIKKAKSA IDDLAQLPPW 120 NPADTIRQAA ANAKPRRSKT LVPPPESGIR GGSGEETEHH HHHHHHQSSF LPASMDSDSI 180 ADTIKSFFPV VSTEAPPPQI IRQTYHQPPS DFPSRANTQN QDLRLSLQSF QNGPPFANQT 240 EPVLFSGQSN PLGLDSSTAS WDQSQQNHHQ SPEFGRIQRL VTWNNGGAAD SAAAGGFVFA 300 SPATTASFQL GYGQNQLFSQ RGPLQSINTP MIPIPGIASS GEFSGFRIPA RFQGEQDDHG 360 DKPSSASSDS RH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 61 | 114 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 61 | 114 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g39800 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392814.1 | 0.0 | transcription factor TCP3 | ||||
Refseq | XP_006392815.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-157 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | V4JXC2 | 0.0 | V4JXC2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392814.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-133 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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