PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g37790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25750.2 Da PI: 6.5402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.1e-12 | 73 | 119 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ Tp1g37790 73 SKACREKQRRDRLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 119 5678**********************9...9**************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.855 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.01E-8 | 72 | 125 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-13 | 73 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-12 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-8 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVSPENTNWL SDYPLVDGAF SDQNPTFNWQ IDQIDGSASV SVEVDGFLCD SDVIKEPGSK 60 KRIKSESCAG SSSKACREKQ RRDRLNDKFT ELSSILEPGR APKTDKVAII NDAIRMVNQV 120 RDEAQKLKDL NSSLQEKIKE LKDEKNELRD EKQKLKIEKE RIEQQLKAIK THPLPQPCFL 180 PNPQTVSQAQ APGSKLVPFT TYPGFAMWQF MPPAAVDTSQ DHVLRPPVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g37790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353406 | 0.0 | AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393084.1 | 1e-157 | transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-155 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A1J3CVH6 | 1e-157 | A0A1J3CVH6_NOCCA; Uncharacterized protein | ||||
STRING | XP_006393084.1 | 1e-156 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-157 | bHLH family protein |
Publications ? help Back to Top | |||
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