PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g37530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 728aa    MW: 83393.9 Da    PI: 7.7859
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g37530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.1e-114389254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
               +ykGV + + +g W A+I+ +     +kr++lg+f +a eAa a++ a  kl+
  Tp1g37530 43 KYKGVVQQH-NGHWGAQIYAY-----HKRIWLGTFNSAAEAATAYDSASIKLR 89
               8****9999.8*********6.....6*********************99987 PP
2B386.91.7e-27166255184
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+k+lt sdv k++rlv+pkk+a +h      +++++e+++++++d+  r+W+++++y+++s+++v+++GW++Fvk++ Lke+D+++F+ 
  Tp1g37530 166 FQKELTASDVRKLNRLVIPKKHAVKHlpsisdDQSEREDVDVVFYDKAMRQWKFRYCYWRSSQSFVFSSGWNGFVKEKSLKEKDVIIFYT 255
                99*****************************988889***************************************************94 PP
3AP241.43.4e-13432479255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +ykGV +++ +g W A+I++      +kr++lg+f +a eAaka++ a  kl+g
  Tp1g37530 432 KYKGVVQHH-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAKAYDSASIKLRG 479
                8*******9.8*********3.....4************************998 PP
4B383.42.1e-26558653184
                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f k ltpsdv+k++rlv+pkk+a ++            +g+  e+ ++++ d+  ++W+++++y+k+s+++v+t+GW++Fv +++Lke+D++vF+ 
  Tp1g37530 558 FRKGLTPSDVGKLNRLVIPKKHAVKYlpfindggnereDGEIVEDDEVVFHDRAMKQWKFRYCYWKSSQSFVFTRGWNGFVMEKNLKEKDVIVFYT 653
                7899****************************777666333347889***********************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-1643100IPR001471AP2/ERF domain
PROSITE profilePS5103217.10843100IPR001471AP2/ERF domain
PfamPF008471.3E-54389IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1343101IPR016177DNA-binding domain
SMARTSM003805.3E-1743106IPR001471AP2/ERF domain
CDDcd000188.16E-2243102No hitNo description
Gene3DG3DSA:2.40.330.106.1E-31161255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-25164256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-24165277No hitNo description
PfamPF023622.6E-24166255IPR003340B3 DNA binding domain
SMARTSM010191.4E-18166267IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379166274IPR003340B3 DNA binding domain
CDDcd000181.76E-23431489No hitNo description
SuperFamilySSF541718.5E-15432490IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-17432490IPR001471AP2/ERF domain
PfamPF008478.8E-8432479IPR001471AP2/ERF domain
SMARTSM003803.3E-20432495IPR001471AP2/ERF domain
PROSITE profilePS5103217.873432489IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-29555660IPR015300DNA-binding pseudobarrel domain
CDDcd100177.75E-23557652No hitNo description
SuperFamilySSF1019363.27E-25557654IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.744558672IPR003340B3 DNA binding domain
PfamPF023629.6E-24558653IPR003340B3 DNA binding domain
SMARTSM010191.3E-18558665IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDDEKSKTSG SSGSFLLLKQ RMRPLNDAPG NALVATAVTK VVKYKGVVQQ HNGHWGAQIY  60
AYHKRIWLGT FNSAAEAATA YDSASIKLRS YDANSHRNFP WSDFTVHEPD FQEGYTTEAV  120
LNMIRDGSYQ RQFREFLRNR SQTVVGSKQS RRYEDSNKCF SCTQLFQKEL TASDVRKLNR  180
LVIPKKHAVK HLPSISDDQS EREDVDVVFY DKAMRQWKFR YCYWRSSQSF VFSSGWNGFV  240
KEKSLKEKDV IIFYTCHVPT LEGQSTNFLM IDVHCFSDND SVFTDEEAMK TENIFNSKLG  300
EEQTKPEENK GGFMLYATFL EHSSKQNFHK TLLSSYIDGG YLELQREWEK DLIPYLSNDH  360
GLGLTSWTLI SSGRNPNLVG LCDDYKTLNL TETSGSSDSM LPVKKRTRPL DDGADNVLVV  420
PTKKVAFTGN AKYKGVVQHH NGHWGAQIYV DHKRIWLGTF KSAAEAAKAY DSASIKLRGF  480
DANSHRNFPL TAFTISEPNF QKGYTTEAVL TMISDGSYQH KFRDFLRLSS QNVPSINIVG  540
PKQVHQESNK CFLCTELFRK GLTPSDVGKL NRLVIPKKHA VKYLPFINDG GNEREDGEIV  600
EDDEVVFHDR AMKQWKFRYC YWKSSQSFVF TRGWNGFVME KNLKEKDVIV FYTCDVPTLE  660
GQSKNFLMID VQCFSDDNSV VFGEEVNVHN SFEKVMKTES FFNSKLEDEE TKSEENKGGF  720
MLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2316565113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g37530
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.21e-167AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-166RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A178WA961e-166A0A178WA96_ARATH; Uncharacterized protein
STRINGAT1G50680.11e-164(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-149RAV family protein