PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g37250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 483aa    MW: 54261.8 Da    PI: 6.3492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g37250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS516.97.4e-158554801374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++++see+++++lf++++Pilk+s+l++N+
  Tp1g37250  55 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTNSVSEEIHVRRLFFDMFPILKVSYLLTNR 154
                689************************************************************************************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                a+ ea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf+fn+ v ++l++l++e+Lrvk+gE
  Tp1g37250 155 AVIEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQFNP-VLSSLDCLNVEQLRVKTGE 249
                *************************************************....9**************************.799**************** PP

       GRAS 201 alaVnlvlqlhrll.......................................................desvsles..erdevLklvkslsPkvvvvve 243
                alaV++vlqlh++l                                                       ++s++l++  ++d++L+ +++lsPk++vv+e
  Tp1g37250 250 ALAVSSVLQLHNFLasdddfmrkncvlrfqnnpngidlqrvlamshgsageapendmsknngyspsgdsASSLPLPNsgRIDRFLNEIWGLSPKIMVVTE 349
                *******************************************************************9977777777779******************** PP

       GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                q++dhn+++++er+le+l++y+alfd+le+k++r+s++rik+E++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ q ++ll+ 
  Tp1g37250 350 QDSDHNGSTLMERLLESLYTYAALFDCLETKVSRTSQDRIKLEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQGRRLLQG 449
                **************************************************************************************************** PP

       GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++dgy+++eesg++v++W+drpL+svSaWr
  Tp1g37250 450 YGFDGYKIKEESGCAVICWQDRPLYSVSAWR 480
                ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.30629460IPR005202Transcription factor GRAS
PfamPF035142.6E-15555480IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVAMFQEDNG TSSVASSPLQ VFSTMSLTRP TLLASSSPFH HCLKDLKPEE RGLYLIHLLL  60
TCANHVASGS LQNANAALEQ LSHLASPDGD TMQRVAAYFT EALANRILKS WPGLYKALNA  120
TQTRTNSVSE EIHVRRLFFD MFPILKVSYL LTNRAVIEAM EGEKMVHVID LDASEPAQWL  180
ALIQAFNSRP EGPPHLRITG VHHQKEVLDQ MAHRLIEEAE KLDIPFQFNP VLSSLDCLNV  240
EQLRVKTGEA LAVSSVLQLH NFLASDDDFM RKNCVLRFQN NPNGIDLQRV LAMSHGSAGE  300
APENDMSKNN GYSPSGDSAS SLPLPNSGRI DRFLNEIWGL SPKIMVVTEQ DSDHNGSTLM  360
ERLLESLYTY AALFDCLETK VSRTSQDRIK LEKMLFGEEI KNIIACEGSE RRERHEKLEK  420
WSQRIDLAGF GNVPLSYYAM LQGRRLLQGY GFDGYKIKEE SGCAVICWQD RPLYSVSAWR  480
CRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-39384822381Protein SCARECROW
5b3h_A8e-39434826380Protein SCARECROW
5b3h_D8e-39434826380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g37250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankAY0912600.0AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393154.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4JY520.0V4JY52_EUTSA; Uncharacterized protein
STRINGXP_006393154.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]