PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g36780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 386aa    MW: 42802 Da    PI: 7.3301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g36780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015282304123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+ +Fs+   L  H r+H
  Tp1g36780 282 HKCSICHIVFSTGQALGGHKRRH 304
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.85E-7229304No hitNo description
PROSITE profilePS501579.743229256IPR007087Zinc finger, C2H2
PfamPF139124.8E-10229251IPR007087Zinc finger, C2H2
SMARTSM003550.092229251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
PfamPF139122.2E-10282306IPR007087Zinc finger, C2H2
SMARTSM003550.12282304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGVHETSHYK RFQKPLRSSR IKEEKVAETM DLFKTLIQLS PSTRLIVVEN LVQEADKAGL  60
AMKAVANLKY ELQSIERSKR KRSLGDDGED PPSKTRCLGE EEECATITVS TELRLKTRAQ  120
SIRQCSIDDD GDGSSRSSSE TVENSISELR PRKEEEDCAN EGVFHKSWLL DSHGGDEDHP  180
SSSSLSPDNR AALILLELSR GTQPQPQIQH QPQTQTQTQP QMPPKFNSHK CCVCGKEFPS  240
YQALGGHKAS HGVKRSQTLV ENATAEAGEK KRPRIAPSGK IHKCSICHIV FSTGQALGGH  300
KRRHYEGVLG GKKSSDDKVI LGRESEADKS CPNNGSIVTN VSGQKQRLVG WIDLNEYPLP  360
EFDNNAEEVE SAIVADKPLQ ERLLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g36780
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470625.13e-79PREDICTED: uncharacterized protein LOC108842259
TrEMBLA0A397Z1951e-78A0A397Z195_BRACM; Uncharacterized protein
STRINGBra018817.1-P7e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-25zinc-finger protein 2