PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g36080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 392aa    MW: 44556.7 Da    PI: 6.6498
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g36080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.36.1e-22195252155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                k r+ Wt++L ++F++av+ LGG+++A Pk++l++   mkv gLt+++v SHLQk+Rl
  Tp1g36080 195 KRRMAWTKDLQQKFLKAVDLLGGPKRANPKALLKClqeMKVTGLTRSNVSSHLQKHRL 252
                68****************************987643349******************8 PP
2Response_reg55.24.1e-19361421107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + +    +++++++  y +v++ +d+eeal+ l  +++++++++ D  mp ++G+++lk i ++  +lp+i++++ + +e + +a   Ga 
     Tp1g36080  36 VLVVDTNITTSLHMKKVMKQYAY-QVTVYSDAEEALAFLinCKHEINIVIWDFHMPVINGSQALKIIGSKM-DLPVIIMSDDNRPESVMKATIHGAC 130
                   89*********************.***************988999**********************6654.8************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+++Kp+ +e l
     Tp1g36080 131 DYVMKPVRKEIL 142
                   ******877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.55E-2733163IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-2834157No hitNo description
SMARTSM004481.0E-1434145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.31535150IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-1636143IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.11E-1737149No hitNo description
PROSITE profilePS5129410.435192255IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-20193255IPR009057Homeodomain-like
SuperFamilySSF466895.38E-12193255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-18195252IPR006447Myb domain, plants
PfamPF002492.8E-6197251IPR001005SANT/Myb domain
Gene3DG3DSA:3.40.50.23001.3E-28328350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSLGNTTEDG DKTLWLQPET SEISSLLIEF PANTNVLVVD TNITTSLHMK KVMKQYAYQV  60
TVYSDAEEAL AFLINCKHEI NIVIWDFHMP VINGSQALKI IGSKMDLPVI IMSDDNRPES  120
VMKATIHGAC DYVMKPVRKE ILANIWQHIV RKRLMSKAGL TQPVQLDVVH NDDGLRQEKD  180
DSMTVDQEKK KTSNKRRMAW TKDLQQKFLK AVDLLGGPKR ANPKALLKCL QEMKVTGLTR  240
SNVSSHLQKH RLSLAEEQIP QQMGEIGWSS AYRTPPFLGG DNGLTASSSV TNGLAMYPFQ  300
ENQYQNGYMG MNNNQFMTNT MPGLPYDHHF QQQQQLEQQQ YQLEQQQYQL AHQLNHVMGN  360
NEPVQASGID LTDLEAIYPS LPYDPNECYN KR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g36080
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613707.11e-162PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-135ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLA0A3P6F8J41e-159A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.13e-76response regulator 19