PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g36040

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 274aa MW: 31287.3 Da PI: 7.5487

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g36040	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.9	2.3e-54	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lp+GfrFhPtdeel+++yL +kv + +++ ++i e+d++k+ePwdLp+k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ ++ + Tp1g36040 5 LPAGFRFHPTDEELITHYLSPKVLNVRFTS-KAIVEIDLNKSEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR-TEVRI 102 799**********************999.88***********999999*************************************.9999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrapkgek++Wvmheyrle Tp1g36040 103 GMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-62	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	58.72	5	151	IPR003441	NAC domain
Pfam	PF02365	2.0E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEENLPAGFR FHPTDEELIT HYLSPKVLNV RFTSKAIVEI DLNKSEPWDL PAKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRTEV RIGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKQPFKPTK EEWVVCRIFE KSVAAKKPQE QPQSSQPSLD STCEANSSIA 180 NNEFGDIELP SLSSASFIDT NHFSHIPSQN GIYLADNMNS NDCTSLIDMN FNMASTSTLP 240 SISSWSTSLL GQNLSPIDSL LLKAFQIRNS YSFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-55	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-55	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-55	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-55	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-55	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-55	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-55	4	157	19	174	NAC domain-containing protein 19
4dul_A	2e-55	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-55	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g36040

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628782.1	1e-137	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	2e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	V4MH12	1e-174	V4MH12_EUTSA; Uncharacterized protein
STRING	Bostr.26675s0262.1.p	1e-178	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-125	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]