PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g36020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 326aa    MW: 38142.5 Da    PI: 5.3983
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g36020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-071155240
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               ++r C+++ +k++ ++C +++ +lC+ C  + H+       H++v
  Tp1g36020 11 RPRDCELCLNKHAVWYCASDDAFLCHVCDASVHSAnqvatkHERV 55
               5788*****************************667788888766 PP
2CCT661.1e-22278321144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++ RY++Krk+R+FeKkirYe+RK +A++RpR+KGrFv+++
  Tp1g36020 278 REARVWRYRDKRKNRLFEKKIRYEVRKINADKRPRMKGRFVRRS 321
                9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8831057IPR000315B-box-type zinc finger
SMARTSM003362.5E-81057IPR000315B-box-type zinc finger
PfamPF006432.1E-61255IPR000315B-box-type zinc finger
CDDcd000219.82E-91557No hitNo description
PfamPF062032.1E-17278320IPR010402CCT domain
PROSITE profilePS5101715.884278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIPEHQEDVK RPRDCELCLN KHAVWYCASD DAFLCHVCDA SVHSANQVAT KHERVCLITN  60
EISNDVLQGT TSKPVWHSGF RRKARTPRIR CEKKPQQRID DDRRREDPRV PEIGGEGMFF  120
IPETNEDDED LTSLVPEFQG FIEMDFFLSN HDGCEETMRQ INFEDETDAT EDLCYNEEEG  180
KTDGDEACPE QSLMSCKKDY NNVITVTTKT EADEDYVSNT RQRNMLLRLN YENVIAAWDK  240
QESPRGATIN QTEFNNTSNF QLVPPGIEEK KVSSRSEREA RVWRYRDKRK NRLFEKKIRY  300
EVRKINADKR PRMKGRFVRR SLANDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g36020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530060.0AK353006.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393308.10.0zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B31e-179COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLE4MWV90.0E4MWV9_EUTHA; mRNA, clone: RTFL01-13-C12
TrEMBLV4KHE50.0V4KHE5_EUTSA; Uncharacterized protein
TrEMBLV4KTA70.0V4KTA7_EUTSA; Uncharacterized protein
STRINGXP_006393308.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-157B-box type zinc finger protein with CCT domain