PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34830
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 417aa    MW: 45790.1 Da    PI: 9.8598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05178200223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 Cp Cg++F+  ++L+ H+ + H
  Tp1g34830 178 ACPQCGEVFPKLETLEIHQAVrH 200
                6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.559177205IPR007087Zinc finger, C2H2
PROSITE patternPS000280177200IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-22202413No hitNo description
Gene3DG3DSA:3.90.228.102.3E-14205414IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAPLPFLSEQ TKSQTRLSSD SKKKNIKKKT TPQPPQTQTQ KLKQKTVPSS SSSSSWSQIK  60
NLLSCKQIEG TRVHDPSKVM SSSCGSSLCK FSDVIYGNAR VIHRSDHSPE SSNLGQDAGL  120
LTRKPVNRGS SSVRSNGCGA YTSYSSSKAM HFKKLSGCYE CHMIVDPSRY PISPRICACP  180
QCGEVFPKLE TLEIHQAVRH AVSELGPEDS GRNIVDIIFK SSWLRKDSPI YKIERILKVH  240
NTQRTIQRFE DCRDAVKSHA HASTRKEPRS AADGNELLRF HCTTVSCSLG SRGTTSLCSN  300
VPGCRVCTII RHGFHAKTLR LGGGSNEIKG VRTTASSGRA HDALRCFDQR RAMLVCRVIA  360
GRVKRVQSDA PEDENGSGSY DSIAGVAGVY TNLEDLVVYN PKAILPCFVV IYKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592621.10.0PREDICTED: uncharacterized protein LOC106300905
RefseqXP_013746890.20.0uncharacterized protein LOC106449724
TrEMBLA0A1J3EID50.0A0A1J3EID5_NOCCA; Uncharacterized protein
STRINGBra015598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-156C2H2-like zinc finger protein