PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g34230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17250.6 Da PI: 10.3909 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5e-17 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r +lg++ ta Aa+a++ a +l+g Tp1g34230 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 82 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.339 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 34 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.03E-25 | 34 | 92 | No hit | No description |
PRINTS | PR00367 | 6.9E-12 | 34 | 45 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 34 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEGELQQKSS RRKRRQPPQE EAASHAATTR LRPYRGIRMR KWGKWVAEIR EPNKRSRLWL 60 GSYTTAVAAA RAYDTAVFYL RGPSARLNFP DLLFQEEDHR SAVAAVDMTA ALIRDKAAEV 120 GARVDALLAC SAKSSSSILV EKPDLNHIPE SGDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 34 | 90 | 6 | 63 | ATERF1 |
3gcc_A | 3e-15 | 34 | 90 | 6 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g34230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107439.1 | 6e-86 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Refseq | XP_013665937.1 | 6e-86 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 1e-76 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | M4DC44 | 1e-84 | M4DC44_BRARP; Uncharacterized protein | ||||
STRING | Bra014056.1-P | 2e-85 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-52 | related to AP2 1 |
Publications ? help Back to Top | |||
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