PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 154aa    MW: 17250.6 Da    PI: 10.3909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-173382255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta  Aa+a++ a  +l+g
  Tp1g34230 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 82
               59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.3393390IPR001471AP2/ERF domain
SMARTSM003803.1E-363396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-303391IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213491IPR016177DNA-binding domain
CDDcd000181.03E-253492No hitNo description
PRINTSPR003676.9E-123445IPR001471AP2/ERF domain
PfamPF008473.1E-103482IPR001471AP2/ERF domain
PRINTSPR003676.9E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEGELQQKSS RRKRRQPPQE EAASHAATTR LRPYRGIRMR KWGKWVAEIR EPNKRSRLWL  60
GSYTTAVAAA RAYDTAVFYL RGPSARLNFP DLLFQEEDHR SAVAAVDMTA ALIRDKAAEV  120
GARVDALLAC SAKSSSSILV EKPDLNHIPE SGDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-153490663ATERF1
3gcc_A3e-153490663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107439.16e-86PREDICTED: ethylene-responsive transcription factor RAP2-1
RefseqXP_013665937.16e-86ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC301e-76RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLM4DC441e-84M4DC44_BRARP; Uncharacterized protein
STRINGBra014056.1-P2e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-52related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]