PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 342aa    MW: 38889.8 Da    PI: 8.6143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57e-36351272103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++i+
     Tp1g34200  35 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIH 122
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Tp1g34200 123 RRKTS 127
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6031124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAMMVENSYG YGGGGTGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT  60
FIVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE  120
IHRRKTSQMI PNQHSPFITH HPPPQIPFSG GASFFSLPPR VDSATAMDEH YWCESPPPRP  180
RVIPTTVDAQ VTALTEDNER LRRNNTVLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNSYL  240
SSFLQKQQQP LPPPQLDYYN NATVPNNNNL NALNSPPTSQ SSITVLEEDT NHESNTRKTK  300
LFGVSLPSSK KRSHHFSDQS SKTRLVLDKS DLGLNLMTAS TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223112717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309313KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718774.10.0heat stress transcription factor B-4
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A078FXM00.0A0A078FXM0_BRANA; BnaC06g00310D protein
TrEMBLA0A3P6H1V60.0A0A3P6H1V6_BRAOL; Uncharacterized protein
STRINGBo6g008100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-179heat shock transcription factor B4