PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g33690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22952.4 Da PI: 5.2479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 37 | 87 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Tp1g33690 37 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 87 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-17 | 37 | 97 | No hit | No description |
PROSITE profile | PS51032 | 21.759 | 38 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 38 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-18 | 38 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-11 | 38 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-32 | 38 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009861 | Biological Process | jasmonic acid and ethylene-dependent systemic resistance | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900030 | Biological Process | regulation of pectin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKALQKVTK RMSSPSSSSS SSSSSSTSTI SKSNMIKKYK GVRMRSWGSW VSEIRAPNQK 60 TRIWLGSYST AEAAARAYDA ALLCLKGSSA NNLNFPEISS SLYNTNNGDN NNSINMSPKT 120 IQRVAAAAAN IDPSSSSSVS TSSPLLSSSP SEDLYDVVSM SQYDQQVISL SESSWYNCFD 180 SDDQFMLPYL TTPPADDFFE EGDIRLWNFC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00185 | DAP | Transfer from AT1G44830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g33690 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560839 | 1e-132 | AY560839.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g44830) mRNA, complete cds. | |||
GenBank | BT025270 | 1e-132 | BT025270.1 Arabidopsis thaliana At1g44830 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-132 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T12C22 | 1e-132 | AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483816.1 | 1e-96 | PREDICTED: ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9LPE8 | 1e-76 | ERF14_ARATH; Ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A1J3G598 | 7e-95 | A0A1J3G598_NOCCA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1J3H9S5 | 7e-95 | A0A1J3H9S5_NOCCA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006393702.1 | 5e-91 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14409 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 1e-67 | ERF family protein |
Publications ? help Back to Top | |||
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