PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g30180
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 253aa    MW: 27818.8 Da    PI: 4.9474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g30180genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13187232655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Tp1g30180 187 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 232
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.43E-12185236No hitNo description
Gene3DG3DSA:4.10.280.105.1E-16186246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-13187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQSTHGGSGG GGGEGGGGEV SRGGLSRIRS APATWIETLL EDDEEDDLKP NLCLTELLTG  60
NSAGIASRDS FEFPSSVEQG LYNHQSGFHR QNSSPADFLS GSGAGSDGFF SNFGIPANYD  120
YLPPNVEISP ASKRSREIEA QFSSQMKEEQ MSGAVSGMMD MNMDKLLEDS VPCRVRAKRG  180
CATHPRSIAE RVRRTRISDR IRRLQELVPN MDKQTNTADM LEEAVEYVKA LQSQIQDLTE  240
QQRRCRCQPK EEH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g30180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107915.11e-153PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-138BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0D3DKJ61e-151A0A0D3DKJ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G2J11e-151A0A3P6G2J1_BRAOL; Uncharacterized protein
STRINGBo8g026850.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-111bHLH family protein