PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp1g29860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 34025.3 Da PI: 7.9111 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.5e-06 | 143 | 162 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Tp1g29860 143 FSCHVCFKTFNRYNNLQMHM 162 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-5 | 124 | 165 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 143 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.055 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.36E-5 | 212 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MESPQYEISS SSSSEKPRDH LQSLDLFPNL NQNPNNNNTL IQPLPLIDRI NLNSNLNLNP 60 KPSYVEEGED EGEEDEEDVV VDVSLHIGLP GSGTSSNDAK QSKKKNGKEI VTYDAGKDIE 120 NEVSGKAYWI PAVEQIIIGF THFSCHVCFK TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ 180 PRAMLGIPCY CCVEGCRNHI DHPRSKPLKD FRTLQTHYKR KHGQKPYACR ICGKLLAVKG 240 DWRTHEKNCG KRWVCVCGSD FKHKRSLKDH VKAFGPGHGP YPTGLFDEQA SYSSVSETLF 300 F |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp1g29860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF190298 | 0.0 | AF190298.1 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_174737.2 | 0.0 | C2H2 and C2HC zinc fingers superfamily protein | ||||
Swissprot | Q8VWG3 | 0.0 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | Q700E7 | 0.0 | Q700E7_ARATH; At1g34790 | ||||
STRING | Bostr.1040s0072.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-161 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|