PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g29590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 527aa MW: 58281.6 Da PI: 5.6933 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.8e-07 | 271 | 292 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Tp1g29590 271 FCTICGKGFKRDANLRMHMRGH 292 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-5 | 268 | 295 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 270 | 297 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 270 | 292 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.0E-6 | 271 | 323 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 272 | 292 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 50 | 321 | 354 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 359 | 381 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
METEDDLCQN NNWGSSSSSS SKLREQVSSD GNQTFTGFTS QQKWEDASIL DYEMGLEEPD 60 LQVFDQMKAS SGQDNNNNNN NNAQGNVDFL QGVRAQAWDP RTMLSNLSFM EEKIHELQDL 120 VHLIVGRKGQ VQGRQDELVS QQQQELITTD LTSIIIQLIS TAGSLLPSVK HNMSTAPGPY 180 TGQPGSAMFP YPREANNVAS QSQNNNNNRG AAQEFDLPKP TIVVDERESH VVEEHEMKDE 240 DDAEEGENLP PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDEYKTPA 300 ALAKPNKESV PGSEPMLIKR YSCPFPGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSFT 360 CSRCHTKKFS VIADLKTHEK HCGKNKWLCS CGTTFSRKDK LFGHIALFQG HTPAIPLEET 420 KPSAGASSER GSSECGNNNN SGMVGFNLGS ATTANQETAQ PGFMEGKISF EESFSPLSFD 480 TCNFGGFHEF PRPMFDDSES SFQMLISSAC GFSPTNGGGG SVSNTSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g29590 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867314.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | D7KK61 | 0.0 | D7KK61_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.1__3547__AT1G34370.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |