PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g29410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 581aa MW: 64644.9 Da PI: 4.8103 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159 | 1.9e-49 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P +Lp + +k+++++w+fF++r++ky++ r++r t++gyWkatgkd+ ++ ++++ Tp1g29410 17 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTELPglSVLKSGDRQWFFFTPRNRKYPNAARSSRGTATGYWKATGKDRVIVY-NSRA 114 69***************************.89***************644888899**************************************9.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkktLvfy+grap+ge+tdWvmhey++ Tp1g29410 115 VGLKKTLVFYRGRAPNGERTDWVMHEYTM 143 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.607 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-56 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MANSSPDSCL KGGKFSAPGF RFHPTDEELV VYYLKRKICG RKLRINAIGV VDVYKVDPTE 60 LPGLSVLKSG DRQWFFFTPR NRKYPNAARS SRGTATGYWK ATGKDRVIVY NSRAVGLKKT 120 LVFYRGRAPN GERTDWVMHE YTMDEEELGR CKNAKEYYAL YKLYKKSGAG PKNGEEYGAP 180 FQEEKWVDGD DDSEDADNVP VPDDHVVHYD NNGRVDDGIF CNPVNVQSDD FDKLLNEIPN 240 APGVNPRQMN ELSGVLQGNS EDEIQNPLLN NSSGEFLAPW EVKKVLPNYQ PYNRNSSFES 300 NLKSGNSFEG SEVNSAFKTS GMAPSVFEKE DYIEIDDLLI PELGASSTEI PEQFLNHGEF 360 GNVNEFDQLF HDVSMSFDIE PIFQGTSTDL SSLSNFANDG RQQFLYQEQF QDQTLENQVN 420 NFMHPSPRLS QFTDDMWFND AQADLYGQPQ SSSAAFASPS SGVMPESTNP TMSVNAQNQE 480 GQNGGGTRSQ FSSALWALMD SIPSTPASAC EGPLNRTLVR MSSLSRIRLN GTSVTTNKVT 540 VAKKRIRNRG FLLLSVVGAL CAIFWVFIIA TVGVLGRPVL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-44 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00178 | DAP | Transfer from AT1G34180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g29410 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145148.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145149.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145150.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145151.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | A0A078GTE2 | 0.0 | A0A078GTE2_BRANA; BnaA05g18430D protein | ||||
TrEMBL | A0A397ZHR7 | 0.0 | A0A397ZHR7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F046 | 0.0 | M4F046_BRARP; Uncharacterized protein | ||||
STRING | Bra034439.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 0.0 | NAC domain containing protein 16 |
Publications ? help Back to Top | |||
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