PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g28600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 658aa    MW: 74453.9 Da    PI: 6.2205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g28600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+ 
  Tp1g28600  14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KKM 111
                699***************************.99***************6448899999**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +g+kktLvfy+grap+ge+t+W+mheyr+
  Tp1g28600 112 IIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141
                9***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-646164IPR003441NAC domain
PROSITE profilePS5100558.70214164IPR003441NAC domain
PfamPF023652.2E-2715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTSETQATLS MESLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP  60
GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV  120
FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQNPYVLCR LFHKPSDICD VANCDEVENV  180
NSTPTTTRCS RDDNSSEMVQ ETATSRVHAQ NRSDEAERCP SDKGSDVKPD DPVIKTEKSV  240
DHAETSRAKD RVLGKSLVEE NPLVRDFSSL YGPSFTQTGD QTYYPAQSSI GFAASHMDSM  300
YSSDFGNCDY GLHFQDGAAI QDESLTDVLD EVFHNHNQFS SEGQDFALPN MMHWPGTTRL  360
LSAEYPFPKD AVGFVNGGAE AACPQNFIPD IVASRWVSDD HVDSKEAVEI QSSSGSSRTL  420
TPLRSNVLGQ YAPASYSAIN PFNSNVNQSE QIPVDRNISP SDTSGFKARS QENQTDLDFV  480
VNQGTAPRRI RLQIEQPFTP DNNEKVRDPN NYEEDEVQSA ISKIVEENEE CFLDKDKSRI  540
HAHASLSESA NLRTQGTAQR RIRLQTRLRK PAITRNNRGR DLNHSEEEGR RSKKKEDFSS  600
SSSSWKKQKK LMRSLLQCSS MVIIMAVIVV LVGIWKESRD AKCSFLFHQL DSFKGMFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46916612167NO APICAL MERISTEM PROTEIN
1ut4_B1e-46916612167NO APICAL MERISTEM PROTEIN
1ut7_A1e-46916612167NO APICAL MERISTEM PROTEIN
1ut7_B1e-46916612167NO APICAL MERISTEM PROTEIN
4dul_A1e-46916612167NAC domain-containing protein 19
4dul_B1e-46916612167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g28600
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008494.10.0NAC domain-containing protein 14 isoform X2
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A1J3GT570.0A0A1J3GT57_NOCCA; NAC domain-containing protein 86
STRINGBostr.3359s0059.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.20.0NAC 014