PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g28570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 480aa MW: 54164.4 Da PI: 4.5777 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.6 | 6.6e-36 | 28 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+n+nsf+v+d+ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Tp1g28570 28 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIT 115 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Tp1g28570 116 RRKP 119 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.2E-39 | 22 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-36 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-63 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MESTEIQPPP PPQPQPVAVL SANAPPPFLS KTYDMVDDPA TDSIVSWSAN NNSFIVWDPP 60 EFARDLLPKN FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKTITRRKPA 120 HGHGHQQSQH SNGQNTSVSA CVEVGKFGLE EEVERLKRDK NVLMQELVRL RQQQQSTDNQ 180 LQTMVQRLQG MENRQQQLMS FLAKAVQSPH FLSQFLQQQN QQNESSRRIS DTSKKRRFKR 240 DGVVSNKDSA SSDGRIVKYQ PPMHEQAKAM FRQLMKMEPY KNGDDGFLLG NGTSTTTEGT 300 EMEISSNNVS GITLQEMPTA SEIQSSSPSG ATPENVTVAE FPTPKEAIPS PDDLSLPEFA 360 DMLPENIGEM PSGNFLDPNM EDFSPFLDSD LFINGDIPFD IDGIPRDPDL EPPIDDYASL 420 LEDILMSSPV PDDMDVTPVD LRNKDNEAEE KQNRWDKTKH MDNLTQQMGL LSPETIDLSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 26 | 117 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-25 | 26 | 117 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 26 | 117 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 26 | 117 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 238 | KKRRFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g28570 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189255 | 0.0 | AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013586097.1 | 0.0 | PREDICTED: heat stress transcription factor A-1d | ||||
Swissprot | Q9LQM7 | 0.0 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | A0A0D3CDP8 | 0.0 | A0A0D3CDP8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6TL04 | 0.0 | A0A3N6TL04_BRACR; Uncharacterized protein | ||||
STRING | Bo5g048950.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6470 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 0.0 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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