PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26900
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 323aa    MW: 36510.6 Da    PI: 7.6744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.4e-052142471553
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                ++++++ +L++++ +      +K + a++L++A+ YI+ 
  Tp1g26900 214 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 247
                7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.842199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-4213253No hitNo description
SuperFamilySSF474593.01E-9213264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7214256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDHHHHHHHN HITSSRNNSS STTSELPFEP VCDNANGNGW IYDTNQVRYD QSSEQRLSKL  60
TDLVGKHWSL APPNNPDMNH NVHHHFDQTN DDVSMYRQAL EVKNEEDLCY NNGLSGGVSL  120
FHDAIESSRS FLDIRLSRPL TDINPSFKPC FKALNLSEFN KNEHQTASLA TARLGTTNAG  180
KKKRCDEVSD EVSKKAKCGG GATLSPDKEL PKAKLRDKIT TLQQIVSPFG KTDTASVLQE  240
AITYINFYQE QVKLLSTPYM KNSSIKDPWG GWDREDHNKR GPKHLDLKSR GLCLVPISCT  300
PIAYRDNTAT DYWSPSYRGS LYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g26900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934880.0AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415377.10.0transcription factor bHLH111 isoform X1
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLV4K7X90.0V4K7X9_EUTSA; Uncharacterized protein
STRINGXP_006415377.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein