PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g26830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 342aa MW: 36888 Da PI: 8.3034 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 36 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s ++ H H Tp1g26830 36 FKCHVCHKKLSTASGMVIHVLQvH 59 89*****************87666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 12.716 | 7 | 66 | IPR003656 | Zinc finger, BED-type |
SMART | SM00355 | 20 | 12 | 35 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.85E-5 | 12 | 61 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 14 | 35 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 36 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK 60 ENVTKVPNAK SGRDSTDIEI YGMQGIPPDV LAAHYGEEEE ESQAKAAKIE IPSAPLGGAV 120 PRPYGMVYQP QQVPGAVRPM YYPGAPMRPV GPGWPMPPPR PQQWYPQNPA ASVPPPAHLG 180 YRPQPLFPVH GMGMTMPPPS SVVSTPPGIP SPSPSMPVPQ PLFPVVNSST SQASPFSTPL 240 PVGGAQQPSP ADATIGSVNA YPPNNSFPVG GTNSHSYASG PNTGGPSVGP PPVIANKAPS 300 SQPNEVYLVW DDEAMSMEER RMSLPKYKVH DETSQVSSDL PF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g26830 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353116 | 0.0 | AK353116.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-B03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305545.2 | 0.0 | protein SUPPRESSOR OF FRI 4 isoform X1 | ||||
Swissprot | Q9C5G0 | 0.0 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | V4K7Y3 | 0.0 | V4K7Y3_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.15697s0404.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 1e-169 | C2H2 family protein |
Publications ? help Back to Top | |||
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