PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 335aa    MW: 39479.3 Da    PI: 9.3146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07211255655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Tp1g26570 211 SIAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 255
                6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.284205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-10206264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-10209268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-5211255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MLSWPIVKLP YFVEFKEKNN LATKSKESDT WKRKRIHHFY GLLKLLLQRR FHPAQGLLYP  60
SSRIALSLII PETDTFFFQA QLQHQLHQPL HQEEPLSPSF FRFNHLDPFF EPFLPSQESF  120
FPNPKAEVFN ESQDLDSFFP TPKHQKLINS SFHFNNTHDS LFLNPNPNLL DSYITEDFNF  180
AEFRVPDFSP AFNVRWSDQN DTKKPELLAQ SIAARKRRRR ITEKTQELGK LIPGSQKHNT  240
AEMFHAAAKY VKFLQAQIEM LQLSQTKMLT QESPRVQREM EFLLVFQAIQ EKLSTEEVCV  300
VPREMVRVLK AEECILRNRN ISRDIIKLLS TDVMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
2215220KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g26570
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415438.21e-132transcription factor bHLH52 isoform X1
SwissprotQ9SA821e-123BH052_ARATH; Transcription factor bHLH52
TrEMBLV4MQ401e-131V4MQ40_EUTSA; Uncharacterized protein
STRINGXP_010501667.11e-133(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]