PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g26190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 901aa MW: 99041.7 Da PI: 6.2535 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.4e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ Tp1g26190 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLL 224 99*****************************8544444..48************************************************..7888889* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Tp1g26190 225 LGIRRA 230 ***997 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k Tp1g26190 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-20 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.464 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.1E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-8 | 750 | 851 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-7 | 753 | 837 | No hit | No description |
PROSITE profile | PS51745 | 24.173 | 762 | 846 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN 60 KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV 120 PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMGMSS PLMWDRGLQS LNFQGMGVNP 420 WMQPRLDASD LLGMQNDVYH AMAAAALQDM RGIDPAKAAA SLLQFENPSG FSMPSPSLVQ 480 PQMLQQQLSQ QQQQQLSQQQ QQAYLGIPET HQSQAQSQSN NLLSQQQQQQ QVAVNHNPSA 540 SGAAVVSAMS QFGSASESNT APLQSMTSLC HQQSFSDTNG GNNTISPLHT LLSNFSQDES 600 SQLLNLTRTN SAMTSSGWPS KRPAVDSSFQ HSGAGNNNTQ SVMEQLGQSH TSNVPPNAVS 660 LPPFPGGREC SIEQEGSASD PHSHLLFGVN IDSSSLLMPN GMSNLRSIGM EGGDSTTLPF 720 TSSNFNNDFS GNLAMTTPSS CIDESGFLQS SENLGSENQQ SNTFVKVYKS GSFGRSLDIS 780 KFSSYHELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK 840 ILSPQEVQQM GKRGLELLNS APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN 900 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 18 | 359 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g26190 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY669788 | 0.0 | AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415485.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | V4L254 | 0.0 | V4L254_EUTSA; Auxin response factor | ||||
STRING | XP_006415485.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |