PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 334aa    MW: 37049.4 Da    PI: 8.108
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.93.6e-34461622135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101
                 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++  +     + s              +++  +s 
  Tp1g26030  46 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISDLPLINTNFDQ-----TLS-------------LSKSACSSG 127
                689**********************************************************999555541.....122.............222233455 PP

        TCP 102 ksaasalnlak.esrakarararertrekmriknk 135
                +s++s l+l++ e r kar+rarert++++ ++ +
  Tp1g26030 128 TSESSLLSLSRtEIRGKARERARERTAKEKDKDLQ 162
                6666679999999***********99998877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-3347160IPR005333Transcription factor, TCP
PROSITE profilePS5136931.03548106IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.766139157IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEVDDDIDAQ QQTSRKLQRF SSDDNNTGMR DWSNPSSRII RVSRASGGKD RHSKVLTSKG  60
LRDRRIRLSV ATAIQFYDLQ DRLGFDQPSK AVEWLINAAS DSISDLPLIN TNFDQTLSLS  120
KSACSSGTSE SSLLSLSRTE IRGKARERAR ERTAKEKDKD LQNAQSSSFT QLLTGGFDEP  180
NRHWTGGSSD CFNPVQLIQN SSSSSLPQFN NHRQESSLNH HNQSQFSFVP DYNFGISSSD  240
SPGATTINGG CYSSRGTLQS NSQSLLLNNI NQRSISSSSS SSSPMDSQSI SFFMATPPPL  300
DHHSHQLPAT FDGRLYLYYG EGNRNTEDKG KDRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2053107155Putative transcription factor PCF6
5zkt_B1e-2053107155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g26030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531560.0AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008427.11e-180transcription factor TCP24
RefseqXP_024008428.11e-180transcription factor TCP24
SwissprotQ9C7581e-151TCP24_ARATH; Transcription factor TCP24
TrEMBLE4MXA91e-178E4MXA9_EUTHA; mRNA, clone: RTFL01-21-I20
STRINGBra032365.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-121TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]