PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g25810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26757.1 Da PI: 4.3809 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00039 | 191 | 227 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a +L +Av+Y+ksL Tp1g25810 191 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 227 899*************95.....68***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.928 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-7 | 191 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-5 | 191 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQNNQFPHFS DEMGDGNMNV PYASASSFDA LFPPCAKLPF HGVELQPSAV CPKNFVIFDQ 60 TYDRSQVMYH PELTHRLANS PSLNGLASTF QNEYVGESFG NYCQEVSSSH QEDPNEIDAL 120 LSADEDYEDD NDDDENEDGG DSEEVSTVRN SSRDYGNTSA ESCCSSYGYS SSSRKQSLSG 180 SASCNNDGKG RKKMKKMMGV LRRIVPGGEQ MNTACVLDEA VQYLKSLKIE AQKRGVGHFS 240 NQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 197 | GRKKMKKMM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g25810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353252 | 0.0 | AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499513.2 | 1e-131 | PREDICTED: transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 1e-128 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | D7KEN4 | 1e-127 | D7KEN4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__3161__AT1G29950.1 | 1e-128 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6195 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 1e-110 | bHLH family protein |
Publications ? help Back to Top | |||
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