PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g25500
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 318aa    MW: 37037.5 Da    PI: 9.8677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g25500genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.9e-125681227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               + e C+f++++G C+yG+rC+F+H+p
  Tp1g25500 56 GVEDCQFYLKNGRCRYGGRCRFNHPP 81
               5799********************97 PP
2zf-CCCH23.21.2e-0797120427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C+++ +tG C++ ++C+F+H+p
  Tp1g25500  97 KDCKHYVQTGLCSFKSNCRFNHPP 120
                68********************97 PP
3zf-CCCH23.87.7e-08133155326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C++f++ G+C +G+ C + H 
  Tp1g25500 133 RPICKRFQK-GFCIHGSDCDYLHM 155
                799******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3195482IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-75481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-65580IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-56079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.13693121IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-493120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-594121IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-597120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-499119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15130157IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4131156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5132154IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEETKGRNPN LGSRESDDRT DRRHKRDPRS SGEKRENATQ MRHELAQSNI NRVRTGVEDC  60
QFYLKNGRCR YGGRCRFNHP PISERDQIPY PLRPGAKDCK HYVQTGLCSF KSNCRFNHPP  120
THLVPVPPER ASRPICKRFQ KGFCIHGSDC DYLHMMVKAP MRPATTLGKR FDERRHGTES  180
SSMAKKRLRT SPDPRERDPR ERSQDVNDDP GHNRMGIKQG EGSIGRQRVE EAQEIFHEQG  240
ERQAQENVQR ENTEGRERIE TVEELRLRVN KAKQDLILLF AVDENRGQKY LQGEQRREPY  300
SVFFPLFRFT LFTGGACS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g25500
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102846.15e-65PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.19e-17floral homeotic protein (HUA1)