PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g25090

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 176aa MW: 19443 Da PI: 9.5701

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g25090	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	60	118	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k Tp1g25090 60 PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKP 118 68999***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	59	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	62	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.183	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010214	Biological Process	seed coat development
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MATQDSQGIK LFGKTITFNA NNNITQTIKK EEQHQQSPEI QTATAVKSSS SSDLTTEKRP 60 DKIIACPRCK SMETKFCYFN NYNVNQPRHF CKGCQRYWTA GGALRNVPVG AGRRKSKPPG 120 RVGGFAELLG AATGAVDQVE LDALLVEEWR AAASHGGFRH DFPVKRLRCY TDGQSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00166	DAP	Transfer from AT1G29160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g25090

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021043	1e-179	AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence.
GenBank	BT029990	1e-179	BT029990.1 Arabidopsis thaliana At1g29160 mRNA, complete cds.
GenBank	CP002684	1e-179	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595581.1	1e-117	PREDICTED: dof zinc finger protein DOF1.5-like
Refseq	XP_013709909.1	1e-117	dof zinc finger protein DOF1.5-like
Swissprot	P68350	1e-110	DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBL	A0A1J3HDQ5	1e-116	A0A1J3HDQ5_NOCCA; Dof zinc finger protein DOF1.5 (Fragment)
STRING	Bo7g045730.1	1e-116	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2809	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-112	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]