PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g24620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 166aa    MW: 18194.5 Da    PI: 10.248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g24620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-172474256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GV  ++ +gr++AeIrdp++   ++r++lg+f t e Aa+a+++a+++++g+
  Tp1g24620 24 RYRGVIKRP-WGRYAAEIRDPVK---KTRVWLGTFSTQEAAARAYDEAALRFRGA 74
               7****9999.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-122473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-312483IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222483IPR016177DNA-binding domain
SMARTSM003806.9E-352487IPR001471AP2/ERF domain
CDDcd000185.60E-222483No hitNo description
PROSITE profilePS5103223.6042481IPR001471AP2/ERF domain
PRINTSPR003672.8E-92536IPR001471AP2/ERF domain
PRINTSPR003672.8E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAPTVKTAAV KKNGGGDGGN KENRYRGVIK RPWGRYAAEI RDPVKKTRVW LGTFSTQEAA  60
ARAYDEAALR FRGAKAKTNF PHSYASPSQS STVESSSSSI PNLNLGSIFS RFPFPKIQVK  120
SGMIVIDDES PRSESESSSM VVDLSPERRS CVFLDLDLNL PPKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-221584475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g24620
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009152.13e-66ethylene-responsive transcription factor 11
SwissprotQ9C5I32e-54ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A1J3DUB21e-73A0A1J3DUB2_NOCCA; Ethylene-responsive transcription factor 11
STRINGBra010880.1-P3e-63(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-44ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]