PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g24600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 187aa    MW: 20561.2 Da    PI: 10.1009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g24600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191160255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  Tp1g24600 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60
               6********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-311168IPR001471AP2/ERF domain
PfamPF008473.2E-131160IPR001471AP2/ERF domain
SMARTSM003803.0E-341174IPR001471AP2/ERF domain
CDDcd000183.51E-281168No hitNo description
SuperFamilySSF541714.84E-221169IPR016177DNA-binding domain
PROSITE profilePS5103222.4051168IPR001471AP2/ERF domain
PRINTSPR003675.6E-111223IPR001471AP2/ERF domain
PRINTSPR003675.6E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG  60
IKAKTNFPSP LSLDLNHIPS APSAPAAAGD NHHNQHQHLW FSAPPPLPPP ISDNHQHHRI  120
FLRTGVLNDK TSDFPSTEAP LYFAASPAAA TTSPRVVGFP MMSSSPSSAT ARRGLAIDLN  180
EPPPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20768163ATERF1
3gcc_A1e-20768163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g24600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890772.11e-103ethylene-responsive transcription factor 12
SwissprotQ94ID61e-102ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A3P6EN521e-102A0A3P6EN52_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.1__3004__AT1G28360.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-92ERF domain protein 12