PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g23870

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 448aa MW: 49161.5 Da PI: 6.8863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g23870	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.4e-05	329	367	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Tp1g23870 329 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 367 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	317	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-11	327	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-5	327	371	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-8	331	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDSANLHLLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN 60 EMLNTRNHNN NTSECMSLSN IHNHSLIQQQ DFPFQWPHDQ SSYHHNEGLH KIKEELSSST 120 TSDHQQGMPK FTDMLNSPVI TNYLKINEHK DYTEKLLLNT ISSGFPINGD YSNSLPSSSS 180 SSSSSSSPSF QCHRGSFSQI YPSVNISSLN ESRRMSNIPR PFDMNMQVMD GRLFEGNVLV 240 PPLNSQEISY LGTSRGSFPP FGLPFHHHLH QTLHHPSSSP THQMEMYSNE PQASEGKRHN 300 FLMATKAGEN ASKKPRVESR SSCPPFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI 360 GYIKFLQSQI ETLSVPYMRA SRNRPGKASP LGSLPQEGDE EEIRDLRSRG LCLVPLSCMT 420 YVTGDGGDGG GGVGSGFWPT PPGFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDSANLHLLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN  60
EMLNTRNHNN NTSECMSLSN IHNHSLIQQQ DFPFQWPHDQ SSYHHNEGLH KIKEELSSST  120
TSDHQQGMPK FTDMLNSPVI TNYLKINEHK DYTEKLLLNT ISSGFPINGD YSNSLPSSSS  180
SSSSSSSPSF QCHRGSFSQI YPSVNISSLN ESRRMSNIPR PFDMNMQVMD GRLFEGNVLV  240
PPLNSQEISY LGTSRGSFPP FGLPFHHHLH QTLHHPSSSP THQMEMYSNE PQASEGKRHN  300
FLMATKAGEN ASKKPRVESR SSCPPFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI  360
GYIKFLQSQI ETLSVPYMRA SRNRPGKASP LGSLPQEGDE EEIRDLRSRG LCLVPLSCMT  420
YVTGDGGDGG GGVGSGFWPT PPGFGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g23870

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189555	0.0	AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870503.1	0.0	transcription factor bHLH110
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1J3EMR7	0.0	A0A1J3EMR7_NOCCA; Uncharacterized protein
STRING	fgenesh2_kg.1__2924__AT1G27660.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]