PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g23040
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 384aa    MW: 43484.4 Da    PI: 8.8887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g23040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-066284123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C++ F r  nL+ H r+H
  Tp1g23040 62 YVCEICNQGFQRDQNLQMHRRRH 84
               9*********************9 PP
2zf-C2H214.78.6e-05141163123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k +  +s++k H++t+
  Tp1g23040 141 WVCERCSKGYAVQSDYKAHLKTC 163
                58*******************98 PP
3zf-C2H211.20.0012171189523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg++Fsr +++  H+ t+
  Tp1g23040 171 DCGRVFSRVESFIEHQDTC 189
                9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-55985No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0186280No hitNo description
PROSITE profilePS5015710.976284IPR007087Zinc finger, C2H2
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355160105135IPR015880Zinc finger, C2H2-like
SMARTSM0035594141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MIDYEKNNNH RNFPSSSSSD LLLAINGVSA TNKRKRRPAG TPDPDAAVVS LSPRTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV RKRVYVCPEP TCLHHDPCHA  120
LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE  180
SFIEHQDTCT IRQPPPTNHR PQKHTANPAA LSNTFSTASI GPLLHGLPLL RPPPHSDQHS  240
LALAYPCNAS SAPFESLELQ LSIGMERTSA QVKKNEKGET SLARERANEE AWKADQMRQE  300
AKRQIEMAET DFEKAKNIRK QAKAELEKAQ VVREEAIKRI NATMLEITCH SCKQIFQLPV  360
MADESTSSLV MSYVSSATTE GECE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17139189555Zinc finger protein JACKDAW
5b3h_F5e-17139189555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g23040
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008661.10.0protein indeterminate-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLD7KAJ70.0D7KAJ7_ARALL; Predicted protein
STRINGBostr.15697s0010.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]