PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22880
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 283aa    MW: 32948.9 Da    PI: 5.626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++++  G g+W+++a+  g++R +k+c++rw++yl
        Tp1g22880 16 KGPWTLEEDTLLTNYIAHNGEGRWNLVAKSSGLKRKGKSCRLRWLNYL 63
                     79******************************99************97 PP
2Myb_DNA-binding48.61.9e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        Tp1g22880  69 RGNLTPQEQLLILELHCKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5751163IPR017930Myb domain
SuperFamilySSF466895.24E-2915110IPR009057Homeodomain-like
SMARTSM007173.2E-131565IPR001005SANT/Myb domain
PfamPF002493.2E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211770IPR009057Homeodomain-like
CDDcd001674.38E-91863No hitNo description
PROSITE profilePS5129424.11764118IPR017930Myb domain
SMARTSM007173.9E-1368116IPR001005SANT/Myb domain
PfamPF002491.8E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2271117IPR009057Homeodomain-like
CDDcd001676.37E-1073112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSNIMKKRCN ENEERKGPWT LEEDTLLTNY IAHNGEGRWN LVAKSSGLKR KGKSCRLRWL  60
NYLKPDIKRG NLTPQEQLLI LELHCKWGNR WSKIAQYLPG RTDNEIKNYW RTRVQKQARQ  120
LNIDSSSHQF LEVVRSFWLP RLIHKMKDNS NTNTNAPPPD SLGPILQEND SYHDSCFNNM  180
DCSTSMSQDL TKISQLMDLS DIETTSSMYF EGSRGSSNQC VSEDYGCFPC IEEEYVVTTM  240
GNSDILPLHD CHVADSTYEE DVTQDPVWNM DDIWQFKEYA HFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24161187108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753LKRKGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22880
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596475.10.0PREDICTED: transcription factor MYB108-like
RefseqXP_013662823.10.0transcription factor MYB62-like
SwissprotQ9C9G71e-102MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D3D6N10.0A0A0D3D6N1_BRAOL; Uncharacterized protein
STRINGBo7g050560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-166myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]