PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g22650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | RAV | ||||||||
Protein Properties | Length: 371aa MW: 40907.2 Da PI: 9.8719 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.8 | 1.1e-12 | 64 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g Tp1g22650 64 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 112 79****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 101.9 | 3.6e-32 | 196 | 306 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ Tp1g22650 196 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamttttvatatTPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERS 295 89****************************999999999885567799**************************************************87 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 ++++l++ + Tp1g22650 296 TGTDRQLYIDW 306 66777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.79E-25 | 64 | 119 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-16 | 64 | 120 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.4E-7 | 64 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.454 | 65 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 65 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-28 | 65 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 191 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-31 | 195 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-29 | 195 | 304 | No hit | No description |
SMART | SM01019 | 1.6E-25 | 196 | 310 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-29 | 196 | 306 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 196 | 310 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDYSCIDEST SNTSESLSIS TPSAKNKLSP PPALRLYRMG SGGSSVVLDL DNGVETESRK 60 LPSSKFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA ASYDIAARRF RGRDAVTNFK 120 SPATDGTDAE SAFLEAHSKA EIVDMLRKHT YADELQQSKR KFLDGDGNGR RCGSMTTAMI 180 NSLGKDGVST AREVLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLPAMTTT TVATATTPSP 240 TKGVLINLED RTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV CFERSTGTDR 300 QLYIDWKVRS GTEQTTPVQT VVRLFGVNIF SATTNAKPNG VVAECGGKKR SREVDLFALG 360 CSKKQAIINA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-59 | 193 | 313 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g22650 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637910.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 0.0 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A0D3CD61 | 0.0 | A0A0D3CD61_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F7T5 | 0.0 | A0A3P6F7T5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g043120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 0.0 | RAV family protein |