PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g22410

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 423aa MW: 46353.1 Da PI: 5.8009

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g22410	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.4e-09	258	306	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Tp1g22410 258 NSHSLAERIRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 306 58***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	253	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.65E-11	253	310	No hit	No description
PROSITE profile	PS50888	15.453	255	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-15	256	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	258	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-9	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0009911	Biological Process	positive regulation of flower development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MDTSDKVDFA AKNSNCDNGV ENFDSVNTSA DWRISASSPP VSYHPDNPIQ ICQTSCSPSQ 60 MMDSSRQNLW HEGGFNVRTD AGTSNVMASF RGNIERPLEM GWSMTQFPAD SGFTERAARF 120 SLLGCGGFSE MMMNQQSLGA PDSVGLFLQD TEIASGSNLG DGGPHKLVKD RSNGSSNVSE 180 DSHSSGGNGK KRKRIGKDSE ADQSRRAQRS GEEQEDKKQK DEQSPNSNAN KTNSGKQASD 240 PFKDGYIHMR ARRGQATNSH SLAERIRREK ISERMKFLQD LVPGCDKVTG KAVMLDEIIN 300 YVQSLQCQIE FLSMKLSTVN PLLDFNLESL IAKDALQSSA PTFVQSMSML YPPLSYLSQT 360 GITQRNLSSV SPLNGGLQRQ EIHGYESDHH NIVPMNHGTG TAPDHDDATA AEEESRVRSN 420 NIV

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MDTSDKVDFA AKNSNCDNGV ENFDSVNTSA DWRISASSPP VSYHPDNPIQ ICQTSCSPSQ  60
MMDSSRQNLW HEGGFNVRTD AGTSNVMASF RGNIERPLEM GWSMTQFPAD SGFTERAARF  120
SLLGCGGFSE MMMNQQSLGA PDSVGLFLQD TEIASGSNLG DGGPHKLVKD RSNGSSNVSE  180
DSHSSGGNGK KRKRIGKDSE ADQSRRAQRS GEEQEDKKQK DEQSPNSNAN KTNSGKQASD  240
PFKDGYIHMR ARRGQATNSH SLAERIRREK ISERMKFLQD LVPGCDKVTG KAVMLDEIIN  300
YVQSLQCQIE FLSMKLSTVN PLLDFNLESL IAKDALQSSA PTFVQSMSML YPPLSYLSQT  360
GITQRNLSSV SPLNGGLQRQ EIHGYESDHH NIVPMNHGTG TAPDHDDATA AEEESRVRSN  420
NIV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g22410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630483	0.0	AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415908.1	0.0	transcription factor bHLH76
Swissprot	Q9C670	0.0	BH076_ARATH; Transcription factor bHLH76
TrEMBL	V4MR96	0.0	V4MR96_EUTSA; Uncharacterized protein
STRING	XP_006415908.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16689	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.2	1e-173	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]