PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 960aa    MW: 109152 Da    PI: 5.7602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017590612123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F++  +L  Hir H
  Tp1g22200 590 FVCKFCNKKFPSGKSLGGHIRIH 612
                89*******************99 PP
2zf-C2H212.70.00039659676320
                ETTTTEEESSHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                C  Cgk F + + L++H+
  Tp1g22200 659 CRECGKGFESLEALRNHM 676
                99***************9 PP
3zf-C2H211.10.0012910931223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +Cp+C k+F++   L  H rtH
  Tp1g22200 910 ECPICFKVFKSGQALGGHKRTH 931
                5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-6585615IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.72E-6586616No hitNo description
SMARTSM003550.0065590612IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676590617IPR007087Zinc finger, C2H2
PfamPF139122.6E-5590608IPR007087Zinc finger, C2H2
PROSITE patternPS000280592612IPR007087Zinc finger, C2H2
SMARTSM003550.023657679IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097657684IPR007087Zinc finger, C2H2
PROSITE patternPS000280658679IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-6658679No hitNo description
PfamPF139121.1E-4658681IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-4659684IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.63E-6904931No hitNo description
SMARTSM003550.85909931IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-10909932IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598909936IPR007087Zinc finger, C2H2
PROSITE patternPS000280911931IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MGFKRPFDDE KFHELPFKHC RQLGFSDKST QFEEFIPRHA LTQKPLATVN ERDLLKPEGG  60
ESSDSKTFDE ESNFVYPGLS MDGSFDWPMK GCDGNDATHS PHSVKYFELG LVPPRTFAPV  120
ETFYSFLLDQ PARKLVPIGP DHQAIIPEWE GCSQNGNVES SGTSKLSGTC VVPMPAFNTP  180
ANLDDIVGKS RALCVCHDRG SIRCVQQHVK EAREEMVKML GFEKFRDLGF CDMGEEVSQS  240
WSEEDAVLFH EVVYSNPVTL GRNFWKYLEA AFYSRTMNEI VSYYFNVFVL RRRATQNRSL  300
MLDIDSDDDD WHEGYGGPLG TQYVEEEEDS AMESPLHQGT DRLNEKVHPL HQEEGEEDAS  360
ISDNDEDDDD VGLTEGGTKM FDEHNMNATV EYMDRSSGCN DERLNLEDDS CTTFELAHDV  420
VNSDWKNSAK KDGSGLVEYQ KKSKECNDNS DWKNSAKKDG SGLVEHQKKS KECNDPLYPK  480
VLTNDKDLQP TGSIMEEIFG HGSWENRARN KKCEGKDYLF FALRNHHHAS FLRRFEVNSS  540
AQKWVLLANL PLLRFRFLKQ PLILILLLWC LIICLREDRI KMNESKEREF VCKFCNKKFP  600
SGKSLGGHIR IHTNEYVVHS DSYNGNRLRR IPKKKKNNKR LVDQREMMTP KQQQQQLCCR  660
ECGKGFESLE ALRNHMDCHR EGEKMMMDSE SDTKTYLCPT RKRSKKVMEQ SNSESFSNGS  720
SSSTPDIDQE VKNAALTLMM LSIDSRGHNL VVNSLAESLE KNSELLETKA SSEEQVKMIS  780
SVEKQSLKTD KIAVDDQLRS TDEDLSDSYS TDSDYFINGS KKSDSDISVD GSLRNTGFGS  840
EFNRFRNGDE LGVKEGRSKY ELRKSKSIVL PSYESDYCAD TNSKIHRSNG SKSPMVKKAS  900
GANKNSNSRE CPICFKVFKS GQALGGHKRT HPIENQEHRI KHKAADMPID LNLPATDIDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22200
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A178WIB30.0A0A178WIB3_ARATH; Uncharacterized protein
TrEMBLA0A1J3DCN00.0A0A1J3DCN0_NOCCA; AT-rich interactive domain-containing protein 2
TrEMBLQ9FZE20.0Q9FZE2_ARATH; At1g26580
STRINGAT1G26580.10.0(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.16e-94C2H2-like zinc finger protein