PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g21900
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 419aa    MW: 47601.4 Da    PI: 6.7884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g21900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-52161431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                l pGfrFhPtdeelv++yLk+kv++ +l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ 
  Tp1g21900  16 LLPGFRFHPTDEELVSFYLKRKVQHYPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSeGNKC 114
                579***************************.89***************7777889***************************************956667 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +glkk+Lvfykgra kg+ktdW+mhe+rl
  Tp1g21900 115 IGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5912175IPR003441NAC domain
PROSITE profilePS5100557.3716175IPR003441NAC domain
PfamPF023653.3E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGERNNDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH YPLSIELIRQ LDIYKYDPWD  60
LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLSDPS PSSKRFFDSP VSPNDSWAIC RIFKKTNTTT  180
LRAFSHSFVD SLPSKTSIDT MSDQKPTNIS HFSSDKILKT SSHFQFHNEN INSIPKTSTS  240
ATPPVATISP FSYLDFTPYE KPTNVFNPVS CLDQQYLTNL FLATQETQLQ FPRLASSNEI  300
PSFLLNMSSS DSSFLGECTS HIDLSAVLAQ EQCPALVSLP QEYQEKGLEG NGEMKNMHGS  360
SEDHDSHCGI LRFGNIGSTV EENHPHHYQD VKHNMTLLES YYSSLSSING DLPTCFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-571617917169NO APICAL MERISTEM PROTEIN
1ut4_B5e-571617917169NO APICAL MERISTEM PROTEIN
1ut7_A5e-571617917169NO APICAL MERISTEM PROTEIN
1ut7_B5e-571617917169NO APICAL MERISTEM PROTEIN
3swm_A5e-571617920172NAC domain-containing protein 19
3swm_B5e-571617920172NAC domain-containing protein 19
3swm_C5e-571617920172NAC domain-containing protein 19
3swm_D5e-571617920172NAC domain-containing protein 19
3swp_A5e-571617920172NAC domain-containing protein 19
3swp_B5e-571617920172NAC domain-containing protein 19
3swp_C5e-571617920172NAC domain-containing protein 19
3swp_D5e-571617920172NAC domain-containing protein 19
4dul_A5e-571617917169NAC domain-containing protein 19
4dul_B5e-571617917169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g21900
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0055080.0AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740118.10.0protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLA0A0D3CDG90.0A0A0D3CDG9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1710.0A0A3P6F171_BRAOL; Uncharacterized protein
STRINGBo5g045190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]