PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g21740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26041.2 Da    PI: 4.8591
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g21740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-1766119356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t+ ql+ Lee Fe+++ +  e++  LA+klgL+ +qV vWFqNrRa+ k
  Tp1g21740  66 KKRKLTPIQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFK 119
                56699***********************************************98 PP
2HD-ZIP_I/II1154.5e-3766156292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkr+l+  q++lLEesFeee++LeperK  la++Lglqp qvavWFqnrRAR+ktkqlE+d+++Lk++y +lk++++ L  ++e+L+++++
    Tp1g21740  66 KKRKLTPIQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFKTKQLEHDCDSLKASYAKLKTDRDILFLQNEALKNKVA 156
                  9**************************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-1852123IPR009057Homeodomain-like
PROSITE profilePS5007116.47161121IPR001356Homeobox domain
SMARTSM003891.3E-1664125IPR001356Homeobox domain
PfamPF000468.4E-1566119IPR001356Homeobox domain
CDDcd000865.24E-1566122No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1868127IPR009057Homeodomain-like
PRINTSPR000317.1E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000317.1E-5101117IPR000047Helix-turn-helix motif
PfamPF021831.9E-13121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MENSNTDSEV FFWFLNQNQS QKLPLSCFPP SSHSAFCGSS SISNTETNTV DEEDVCESYK  60
MREITKKRKL TPIQLRLLEE SFEEEKRLEP ERKLWLAEKL GLQPSQVAVW FQNRRARFKT  120
KQLEHDCDSL KASYAKLKTD RDILFLQNEA LKNKVALLKE KLKMQENLET QSTEAEKLGE  180
EGSSVKSDNT QYSDEEGLGN NQYSFPELAA LGFYYDPTLS ASNLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARFKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g21740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003481e-112AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026841e-112CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001185103.11e-140Homeobox-leucine zipper protein family
SwissprotP0CJ651e-141ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A178WF451e-139A0A178WF45_ARATH; HB54
STRINGAT1G27045.11e-139(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-124HD-ZIP family protein