PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g20820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 329aa    MW: 37042.7 Da    PI: 4.6475
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g20820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61.1e-082723062155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Tp1g20820 272 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 306
                569*****************************885 PP
2ELK30.11.1e-10226247122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                +LK++LlrK++++++sLk EFs
  Tp1g20820 226 DLKDRLLRKFGSRISSLKLEFS 247
                69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-2085129IPR005540KNOX1
PfamPF037901.6E-2087128IPR005540KNOX1
SMARTSM012561.1E-26137188IPR005541KNOX2
PfamPF037918.2E-25141187IPR005541KNOX2
PROSITE profilePS512139.83226246IPR005539ELK domain
SMARTSM011886.3E-5226247IPR005539ELK domain
PfamPF037892.6E-7226247IPR005539ELK domain
PROSITE profilePS5007112.341246309IPR001356Homeobox domain
SuperFamilySSF466892.65E-19247322IPR009057Homeodomain-like
SMARTSM003891.5E-12248313IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-27251310IPR009057Homeodomain-like
CDDcd000866.12E-12255310No hitNo description
PfamPF059202.9E-17266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDGMYGFHPT IGDYSDKTVL MMSPDNLMFP SDYQTLLCSS AGDNHVSDVF GSDELLSAAA  60
SALSSEAASI APEIRRSDDD NVSLSVIKAK IACHPSYPRL LQVYIDCQKV GAPPEIACLL  120
EEIQRESHVY KQDLAPTSSC FGADPELDEF METYCDILVK YKSDLARPFD EATTFLNKIE  180
MQLRNLCTGV ESARGLSEDG VISSDEELSG GDEISQDGKQ RCEDRDLKDR LLRKFGSRIS  240
SLKLEFSKKK KKGKLPREAR QALLDWWNVH YKWPYPTEGD KIALADATGL DQKQINNWFI  300
NQRKRHWKPS ENMPFAMMDD SSGSFFTEE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g20820
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850951.20.0homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1J3I5Y40.0A0A1J3I5Y4_NOCCA; Homeobox protein knotted-1-like 6
STRINGAT1G23380.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.10.0KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]